PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0120000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GRAS
Protein Properties Length: 397aa    MW: 43617.4 Da    PI: 6.7795
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0120000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.91.7e-89273953374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL e A a+s++d  ++++lL+ ++elasp+gd  q+laayf++AL  r ++s+ ++ ++l++ ++++++ +++  ++  f+e++P+ +f+h++
  Spipo0G0120000  27 RLLRESAAAISEKDSGRIHHLLWMVNELASPYGDREQKLAAYFLQALFCRATDSGGRCLRTLTAAADRTRSFESTRRVMLRFQELTPWSTFGHVA 121
                     578999********************************************************9999998877777777777************** PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      N aIlea++ge+r+H++D++ ++++QWp+Ll+ LasR+++pp+lR+T+v+++++         ++e+g+r++kfA+ +gvpfef+++       
  Spipo0G0120000 122 SNGAILEAMDGETRLHVVDLSCTYCTQWPTLLENLASRNDQPPHLRLTVVNPSAAAdtgsVDPVVSEIGRRMEKFARLMGVPFEFHTV------- 209
                     ***************************************************98877888778899**********************7....... PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpresee 281
                       l++Lr++ gEa+aVn++ +l r+        ++r+++  l+++l Pkvv+vve+ead   ++ +Fl+ f e+ ++ys +f+ le+++p++s+e
  Spipo0G0120000 210 GGLHQLRLRDGEAVAVNCMGALRRVA------VDQREAFQGLLRDLHPKVVTVVEEEADFssTRDDFLRCFDECWRFYSLFFEILEESFPPTSQE 298
                     45699********************8......445779*******************999545569***************************** PP

            GRAS 282 rikvErellgreivnvva..cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvs 369
                     r  +Ere  +r i  ++a  ++g+    r+et++ W erl++ GF+pv +s+++ +++ +ll++++  g++v           l+l Wk++p+v+
  Spipo0G0120000 299 RLLLERE-CSRGIIGALAggASGDGGGGRRETAALWCERLRK-GFSPVGFSSDVLDDVAALLKRYP-AGWSVSpaagaAAPPGLFLAWKGHPVVW 390
                     *******.67777777773345666889************75.***********************.889999555545578899********** PP

            GRAS 370 vSaWr 374
                     +SaWr
  Spipo0G0120000 391 ASAWR 395
                     ****8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.1331371IPR005202Transcription factor GRAS
PfamPF035145.8E-8727395IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQSFWQLKSR EEAGAGDGGG GGRWAGRLLR ESAAAISEKD SGRIHHLLWM VNELASPYGD  60
REQKLAAYFL QALFCRATDS GGRCLRTLTA AADRTRSFES TRRVMLRFQE LTPWSTFGHV  120
ASNGAILEAM DGETRLHVVD LSCTYCTQWP TLLENLASRN DQPPHLRLTV VNPSAAADTG  180
SVDPVVSEIG RRMEKFARLM GVPFEFHTVG GLHQLRLRDG EAVAVNCMGA LRRVAVDQRE  240
AFQGLLRDLH PKVVTVVEEE ADFSSTRDDF LRCFDECWRF YSLFFEILEE SFPPTSQERL  300
LLERECSRGI IGALAGGASG DGGGGRRETA ALWCERLRKG FSPVGFSSDV LDDVAALLKR  360
YPAGWSVSPA AGAAAPPGLF LAWKGHPVVW ASAWRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-284039518375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009785856.11e-175PREDICTED: protein SHORT-ROOT-like
SwissprotQ9SZF71e-129SHR_ARATH; Protein SHORT-ROOT
TrEMBLA0A068U5L31e-175A0A068U5L3_COFCA; Uncharacterized protein
STRINGPOPTR_0017s05450.11e-172(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-118GRAS family protein